Phylogeny Software Submission

Phylogeny Programs site submission form

If you have a program or package that you want listed in the Phylogeny Programs listing, please fill out this form. Then press the Preview button at the bottom. You will be shown a preview, and you can correct it by pressing the Back button at the bottom of the preview page. When it is correct, press the Send button on the preview page. It will email the information to me, and I will evaluate it and (if appropriate and properly filled out) I will modify it as needed, and see whether we can add this listing. Note that if you have a program icon you should also email it to us as (if possible) a 32x32 JPG or GIF so we can use it as a visual tag that adds interest).

An advantage of using this form is that entries done this way will "jump the queue" and be entered ahead of entries that are in our usual Waiting List.

This form is experimental and we will be expanding it as we discover its limitations. It allows you to compose a rather stereotyped entry more or less as it will appear. The text in italic like this is not part of the entry but is instructions for you.

I have filled in the form with a description of my PHYLIP package, to provide an example. You should of course erase or replace all of that.

And please, do not paste some sequence data into this form and submit it! Some people have done that. This is not a server to run PHYLIP! It is a submission form for descriptions of software.

Names of the main program authors
Department	of the
Institution
Email address	@

The short name of your program
The full name that explains this abbreviated name	()
The version number in distribution:	version
The short description of the program
A longer description (maximum 975 characters)	It has programs for molecular sequence, distances, gene frequencies, continuous characters and discrete characters. It also has programs to draw phylogenies, interactively rearrange trees, and do bootstrap and jackknife resampling. PHYLIP has been in distribution for 26 years, making it the oldest continuously-distributed package.
Reference	described in the paper: Felsenstein, J. 1989. PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics 5: 132-133.
Availability (check all that apply)	It is available as: C++ source code Java source code C source code C# source code Perl script Python script an R package a MATLAB package Java executables Windows executables Linux executables Powermac Mac OS X executables Intel Mac OS X executables Mac OS X universal executables Mac OS 9 executables other:
URL of program web site
(Leave the next three items empty if the software is distributed for free)
Commercial Availability	It is available at a price of from
Company name
URL of product web site
Type of analysis (check all that apply):	Categories: General-purpose packages Parsimony programs Distance matrix methods Computation of distances Maximum likelihood and Bayesian methods Quartets methods Artificial-intelligence and genetic algorithms methods Invariants (or Evolutionary Parsimony) methods Interactive tree manipulation Looking for hybridization or recombination events Bootstrapping and other measures of support Compatibility analysis Consensus trees, subtrees, supertrees, distances between trees Tree-based alignment Gene duplication and genomic analysis Biogeographic analysis and host-parasite comparison Comparative method analysis Simulation of trees or data Examination of shapes of trees Model selection Clocks, dating and stratigraphy Description or prediction of data from trees Tree plotting/drawing Sequence management/job submission Teaching about phylogenies Web or e-mail server that can analyze data for you
Comments or any additional information you wish added to your entry:
This form would be much more useful if you would...
When you are finished, press here to preview your submission

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