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Unknown mode. P@@1.2 DNATREE Molecular evolution and phylogeny version %s Tree menu: Yes, simulateNo, read one in S Simulate a tree? %s N Number of species? %ld C Number of sites? %ld T Transition/transversion ratio? %f ANSI(none)IBM PC 0 Graphics type (IBM PC, ANSI, none)? %s Type character or type Y to accept these settings %c%*[^ ]number of total species? %ld%*[^ ]number of sites? transition/transversion ratio? %lg%*[^ ] random number seed? (any whole number less than 1,000,000,000) prob of change per unit time? %lf%*[^ ] ERROR IN USER TREE: UNMATCHED PARENTHESIS OR MISSING COMMA ERROR IN USER TREE: UNMATCHED PARENTHESIS OR NOT BIFURCATED NODE ERROR IN USER TREE: UNMATCHED PARENTHESIS OR MISSING SEMICOLON %*[^ ] ERROR IN USER TREE: TOO MANY LEFT PARENTHESES ERROR IN USER TREE: DUPLICATE NAME FOUND -- CANNOT FIND SPECIES: tree file ??@ Here are the sequences that were simulated along that tree. A dot (.) means that the base is the same as in the first species. Here are sites %ld through %ld out of a total of %ld. ----------------------------------------------------------------------------- %c%c .AGCT Choose what to do next: N See the next group of sites P See the previous group of sites D Turn off using dot-differencing D Turn on using dot-differencing Y Finish looking at sequences Type one of these letters, then press on Enter key %5ld%5ld %c%c Do you want to write the data out onto a file? (Y or N) please type name of that file: data file@%ld Interactive search for most parsimonious tree Settings for this run: O Outgroup root? Yes, at sequence number%3ld No, use as outgroup species%3ld T Use Threshold parsimony? Yes, count up to %4.1f per site No, use ordinary parsimony L Number of lines on screen?%4ld Are these settings correct? (type Y or the letter for one to change) OTLType number of the outgroup: BAD OUTGROUP NUMBER: %4ld Must be in range 1 -%2ld What will be the threshold value? BAD THRESHOLD VALUE: it must be greater than 1 Number of lines on screen? Not a possible option! $@? Reading input file ... (0(BK@%2ld SITE%4ld Subtree :A, :C, :G, :T, :? Steps:%10.5f BEST YET! (as good as best) better worse! %3ld sites compatibleư> X_4_=___F____________O R Rearrange a tree by moving a node or group # Show the states of the next site that doesn't fit tree + ... of the next site - ... of the previous site S Show the states of a given site . redisplay the same tree again T Try all possible positions of a node or group U Undo the most recent rearrangement W Write tree to a file O select an Outgroup for the tree F Flip (rotate) branches at a node H Help (this screen) ? " " " Q (Quit) Exit from program X Exit from program TO CONTINUE, PRESS ON THE Enter OR Return KEYRemove everything to the right of which node? Add before which node? Not a possible rearrangement. Try again: SHOW: (Character number or 0 to see none)? Try other positions for which node? Not a possible choice! WAIT ... BETTER: %3ld:%6.2f NONE TIED: %3ld:%6.2f NONE ư>No operation to undo! ; :%6.5f Tree file already was open. A Add to this tree to tree file R Replace tree file contents by this tree F Write out tree to a different tree file N Do Not write out this tree Which should we do? Please enter a tree file name> Tree written to file %s Flip branches at which node? Can't flip there. No such node. Which node should be the new outgroup? NEXT? (Options: R # + - S . T U W O F C H ? X Q) (H or ? for Help) FORSTUXQ+#-.WH?Do you want to write out the tree to a file? (Y or N) AAAAAAAAAAAAAAAAAAAAAAAA0AAAAAA"A)AAAAAAA=A7 Computing steps needed for compatibility in sites ... Write this tree out to a tree file (Y or N) outfiletreefile Done. 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