# FILE: get-fasta-ids.py # AUTHOR: William Stafford Noble # CREATE DATE: 18 January 2007 # PROJECT: GENOME 559 import sys # Make sure we got a filename on the command line. if (len(sys.argv) != 2): print("USAGE: count-fasta.py ") sys.exit(1) # Open the file for reading. fasta_file = open(sys.argv[1], "r") num_seqs = 0 for line in fasta_file: # Print ID if this line starts a new sequence. if (line[0] == ">"): words = line.split() first_word = words[0] print(first_word[1:]) fasta_file.close()