Genome Sciences 590

Evolution and Population Genetics Seminar

Winter Quarter, 2006

topic: Population Genetics

Tuesdays and Thursdays
502 Kincaid Hall
12:30pm - 1:20pm.

This quarter the Evolution and Population Genetics seminar will be combined with the MathBio seminar (Biology 510). The former is 1 credit, the latter 2 credits.

Ben Kerr of Biology Department will co-lead the seminar with me.

He and I have decided to combine the Evolution and Population Genetics seminar with MathBio this coming winter quarter for a themed seminar series on analytical, computational, and statistical approaches to evolutionary and population genetics. The first session (Tues 12:30-1:20pm) has traditionally been an introduction to the biological side of the project as well as an introduction to any key techniques. The second session (Thurs 12:30-1:20pm) has traditionally been a more detailed presentation of the relevant analysis. In the past, it has been more than sufficient to prepare only an hour's worth of material given the number of questions. Joe and I would like to keep the conversation at a relatively high level, so speakers will can safely assume that the audience knows the basics of population genetics.

Topics

DatesSpeakerTopic
January 3Orientation/introductions 
January 5(no class) 
January 10, 12 Robin Waples (NOAA)What is a population?
January 17, 19Diane Genereux (Biology)DNA methylation and age structure in populations of cells and molecules
January 24, 26Ben Kerr (Biology)How population structure tips the scales of mutation-selection balance
January 31, February 2Garrett Hellenthal (Statistics)Estimating crossover recombination and gene conversion rates from the human genome
February 7, 9Garry Odell (Biology)Mathematical/computer modeling as a tool for comprehending cytoskeletal dynamics (Note - this is A023D instead of K502)
February 14, 16Lorenz Hauser (Fisheries)An empirical verification of population assignment methods with parentage data: Hatchery and wild steelhead in Forks Creek, WA, USA
February 21, 23Arindam Roy Choudhury (Statistics)Likelihood inference for population structure using the coalescent
February 28, March 2Paul Scheet (Statistics)A fast and flexible model for population genetic data with applications
March 7, 9Joe Felsenstein (Genome Sciences and Biology)A phylogenetic application of the threshold model in quantitative genetics

References

Waples (Jan 10, 12)
PDF of paper by Manel et al. (2005)
PDF of paper by Waples and Gaggiotti (in press)
Genereux (Jan 17, 19)
PDF of paper by Potten et al. (2002)
PDF of paper by Genereux et al. (2005)
PDF of paper by Cairns (1975)
Kerr (Jan 24, 26)
PDF of paper by Neuhauser (2002)
Hellenthal (Jan 31, Feb 2)
PDF of paper by Li and Stephens (2003)
Odell (Feb 7)
Abstract of Garry Odell's talk
Hauser (Feb 14, 16)
PDF of Hauser et al., 2006
PDF of Manel et al. review 2002
Roy Choudhury (Feb 21, 23)
PDF of Nielsen and Slatkin 2000
PDF of Nielsen et al., 1998
Scheet (Feb 28, Mar 2)
PDF of Scheet and Stephens, 2006
Felsenstein (Mar 7, 9)
Link to journal HTML copy of paper by Felsenstein (2005) (if this doesn't work look using the UW library system for Philosophical Transactions of the Royal Society, series B, issue of 29 July 2005, and find my paper).
References will be listed here for each session, when provided by the speakers. When a reference can be accessed by web from the UW, a link will be given here (note that it may not work from home, unless you use the remote access feature for reading University journal subscriptions, as you might not be recognized as being covered by the UW's subscription to an electronic journal). For some others distribution arrangements may be made in class.

Joe Felsenstein ( joe (at) gs.washington.edu )