WWW-server of Felsenstein lab

Department of Genome Sciences, University of Washington , Seattle

These pages are on evolution.gs.washington.edu, a 2.0GHz AMD XP 2800 running Linux located in S420B Foege Building.

Web documents available:

• Web pages of members of the lab:
  
  
  • Joe Felsenstein (Genome Sciences Department page)   (Biology Department page)
    • Research interests
    • Curriculum Vitae (CV)
    • Inferring Phylogenies, published by Sinauer Associates.
      • Known typographical errors in the book, with their corrections
      • Datasets used in the book, for downloading.
      • Reviews of the book, and some reactions to them.
      • Searching for phrases in the book: see the search box on this Amazon web site. You can find all occurrences of any phrase, by page and with some context around it!
    • Download the Bibliography of Theoretical Population Genetics (1867-1981)
    • Theoretical Evolutionary Genetics, a textbook (as PDF, for personal use only)
    • My workshop talk on 26 June 2004 at the GECCO 2004 genetic and evolutionary computation meeting in Seattle. An introduction to population genetics theory for people in those fields. Presented here because they lost the handouts.
      • PDF suitable for projection (but has blue background -- do not try to print it)
      • PDF black on white background suitable for printing.
      • Errata for these projections.
    • Courses I teach (in each case the most recent course web page is linked to):
      • Genome 453 (Evolutionary Genetics), an upper-undergraduate course on the genetic mechanisms of evolution. Odd-numbered years in the Autumn quarter (Mary Kuhner teaches it in the other academic years in Winter quarter).
      • Genome 570 (Phylogenetic Inference), a graduate course on phylogenies. Even-numbered years in the Winter quarter.
      • Genome 562 (Theoretical Evolutionary Genetics), a graduate course on Theoretical Population Genetics. Odd-numbered years in the Winter quarter.
      • Genome 541 (Computational Molecular Biology). I teach four weeks of it each Spring quarter. Bill Noble and others teach the rest of the quarter. This is the second quarter of a two-quarter sequence starting with Genome 540.
      • CSE 590c (Reading and Research in Computational Biology) as one of four faculty members leading this seminar every quarter of the regular academic year (the others are Martin Tompa, Larry Russo, and Bill Noble).
      • Genome 590 (Evolution and Population Genetics Seminar) yearly in Winter quarter. Usually combined with the PopGenLunch weekly informal seminar those quarters.
    • The Amphioxus Song web page.
    • Some cool stuff that should be better known.
    
    
  • Mary Kuhner and Jon Yamato

• Former members of the lab (with links to their web pages)
  • Michael Turelli, University of California, Davis (student, 1973-1977)
  • Shozo Yokoyama, Emory University (student, 1973-1977)
  • Bruce Walsh, University of Arizona, (student, 1978-1983)
  • Ruth Shaw, University of Minnesota (postdoc, 1984-1987)
  • Jeff Thorne, North Carolina State University, (student, 1986-1991)
  • Emília Martins, Indiana University (postdoc, 1992-1994)
  • Peter Beerli, Florida State University (postdoc and Research Assistant Professor, 1994-2003)
  • Nicolas Salamin, University of Lausanne, Switzerland (postdoc, 2003-2004)
  • Lindsey Dubb, Seattle, Washington (student 1996-2006)
    • His Ph.D. thesis "A Likelihood Model of Gene Family Evolution" can be accessed at this link as a PDF.

• Programs available from our lab
  • phylip.html Information on the PHYLIP phylogeny inference package, including the list of Phylogeny Programs.
  • lamarc.html Information on the LAMARC coalescent likelihood package.
  • PopG genetic simulation teaching program. (Older versions here)
  • Dnatree DNA phylogeny teaching program.
  • Contevol Continuous character evolution teaching program.

• waterfrogs.html Information on European water frogs (Rana esculenta group) Link to pages at Peter Beerli's site at Florida State University
• ldmtg/ Linkage Disequilibrium Mapping Meeting, Seattle, 20 Nov 99.

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